Showing posts with label AddyPross. Show all posts
Showing posts with label AddyPross. Show all posts

Tuesday, August 13, 2013

Modern Biology As A Series of Footnotes to Plato & Aristotle



While Addy Pross failed to convince me that biology is chemistry, he has confirmed my long held opinion that modern biological science has largely come back around to Plato and Aristotle.  I provided one example in my last post.  Here is another. 
Pross’ book centers on what one may call the central problematic of modern biology: the fact that, while biological processes are and must be perfectly consistent with the natural laws that govern all physical substance, organisms seem to have sets of rules that are entirely their own and they seem to go in the opposite direction from all inorganic chemistry.  Organisms move uphill toward greater degrees of complexity rather than move downhill toward simplicity. 
As I have detailed in previous posts, Pross deals with this by distinguishing between static complexity (which governs everything below the level of molecular replicators) and dynamic kinetic stability, which is displayed by replicators.  Whether this in any way moves toward a solution rather than merely restating the problem, I will ignore here. 
It does seem to me that this question maps back onto the history of ancient Greek philosophy quite well.  For the ancients, the central problematic was how to explain coming to be and change.  Let us state it in its simple form:
If something new can come to be, it must come to be either out of what is or out of what is not.  It cannot come to be out of what is, because what already exists cannot come to be.  It cannot come to be out of what is not, because there is nothing there to come to be out of. 
That this is not mere word play is evident by the emergence of two schools of pre-Socratic thought.  One was that of the monists.  They argued that, in fact, nothing ever does come to be or change at all.  That is because there is really only one thing and it never changes.  Consider, by way of analogy, a pyramid.  It is wide at the base but narrow at the top.  This does not mean that it changes, but only that it offers different aspects to different points of view.  Likewise, the small tree in my yard seems to become bigger as time goes on.  This is an illusion.  It is always one thing at one time, and time is just another dimension along which different aspects are offered to the observer. 
If this seems implausible, it is well to consider that it is the view of most modern physicists.  Time is just another dimension, analogous to the three dimensions of space.  At time T1 I am at position X1, Y1, and Z1.  This fact is always true and does not change.  At T2, I have moved to X2, etc.  Reality viewed as a whole is nothing more or less than the sum total of all such facts.  None of the facts ever changes. 
A less radical solution was offered by the ancient atomists.  They posited that the only real things are the uncut particles out of which everything else is composed.  The atoms (uncut things) are eternal.  They never come to be nor do they ever decompose, since they aren’t composed of anything except themselves.  All those things that appear to come to be, like stars and people, are mere aggregates of atoms.  Complex things do not exist in any real way and so it is unnecessary to account for their coming to be. 
Aristotle cut the Gordian knot first by positing three principles: potentiality, actuality, and a substratum.  How does an iron skillet come to be?  It comes to be from a lump of iron which is potentially a skillet.  The iron is heated, becoming red and hot from what was black and cold.  It is then shaped into an actual skillet.  Thus it comes to be from what is not: the iron that was potentially but not yet actually a skillet.  It also remains what it is, still iron after the shaping. 
Contrary to the atomists, something new has come to be beyond the mere aggregation of the materials.  The skillet has powers that the lump of iron did not have (for example, holding a few lamb chops in hot oil).  Contrary to the monists, there is no necessity to dispense with the element of time.  As the iron was potentially a skillet, it was also potentially something else (a hammer?) or might just have continued its career as a lump.  Potentially suggests an open future. 
This account of coming to be and change is hylomorphic, from the Greek words for matter and form.  It recognizes form as something real, but requires a material substratum underlying the processes of generation and change.  Let us map this back onto Pross’ categories.  In simple chemical reactions, the nature of the materials controls all the action.  Forms and formal processes are entirely derivative from the elements and the downhill pressure of the second law of thermodynamics.  Hylomorphic explanations recognize that the same material can have very different powers in different arrangements.  This is true even of the inorganic world.  A cloud behaves differently from a pool of water. 
Aristotle made a leap beyond simple hylomorphism when he recognized individual organisms as substances.  A substance (ousia in Greek) functions as a bearer of properties and as the substratum of change.  This horse over here is so large and of a certain color.  It persists as what it is while it grows from a foal to a yearling to a filly to a mare.  This kind of persistence is what Pross means by dynamic kinetic stability.  The horse continual communicates its being over time, for as long as it lives.  This kind of substance apparently emerges on earth with the first genuine replicators, presumably the ancestors of RNA molecules. 
At some point in his thinking, Aristotle began to recognize the species as a substance.  If what persists over greater periods of time is more real than what persists over shorter terms, then the species is more substantial than the individual organism.  By taking this step, Aristotle was getting at something that has stirred the pot of the modern philosophy of biology.  What is the unit of selection in evolution?  The most obvious answer is the individual organism.  A less obvious but very robust answer is that it is the genes.  The individual may be viewed as a vehicle for the genes, discarded as they mechanically pursue immortality.  At least two philosophers of biology (Michael Ghiselin and David Hull) have argued that conspecific populations are genuine individuals.  They are following the track laid down by the philosopher. 
That, as rich and rewarding as it is, is the limit of Aristotle’s approach.  Aristotelian substances, however large, exist as visible objects at some present moment.  Modern Darwinian biology can conceive of a species as an object that extends backwards into the past.  When Darwin spoke of the origin of the species, he might have meant a single species consisting of all the organisms on earth.  Such an object, if we choose to recognize it, is Platonic rather than Aristotelian.  All existing organisms and populations of organisms are buds and branches of one great, invisible tree. 
Or we might consider that what really persists over geological time is not the vast number of replicators but replication.  Genes, after all, are more ephemeral than the organisms they underwrite.  They must be constantly recreated.  Replication is an idea, but not merely a nominal idea.  It logically enables and constrains the processes of ontogeny and evolution. 

Saturday, June 1, 2013

Biology At Odds With Physics



I have been reading What is Life?  How Chemistry Becomes Biology, by AddyPross.  Pross proposes to answer Erwin Schrödinger’s famous question with the tools of systems chemistry.  Don’t ask me what that is; I am only on the first chapter.  It is a very good chapter.  He sets forth very clearly and forcefully what may be the deepest problem for modern natural science. 
Biology has more principles than physics.  Nothing in living organisms contradicts the principles of physics; however, living organisms are governed by principles that are utterly alien to and seem at least to go radically against the current of the non-living world.  Pross considers a number of such cases. 
One is that living organisms display teleonomy.  This is a sanitized version of the older word, teleology.  I believe the coinage belongs to Ernst Myer.  It means that living organisms have an agenda.  They act for a purpose.  Predators pursue prey, boys pursue girls, and bacteria swim toward food and away from toxins. 
The very existence of teleonomy, however, leads to a strange, even weird reality: in some fundamental sense we are simultaneously living in two worlds, each governed by its own set of rules—the laws of physics and chemistry within the inanimate world and the teleonomic principle that dominates the biological world.  Indeed, given the existence of two distinct worlds we find ourselves interacting quite differently with each of those worlds.  
A man and a bag of hammers will fall at the same rate from a ledge but the man can try not to fall whereas the bag doesn’t care.  Once someone has thrown a rock at me I must depend on the laws of physics to avoid it; however, I might try to persuade him not to throw it in the first place.  Again, nothing is the laws of physics is contradicted by the organisms behavior but nothing in the laws of physics could allow us to expect or account for or predict the organisms behavior. 
A second feature of living organisms that is astonishing from the perspective of physics is that they are constantly recreating themselves.  An organism is in some senses like a machine: it has a general function and is composed of parts with functions that contribute to the operation of the whole.  However, a clock does not repair itself.  An organism, by contrast, is constantly rebuilding all its parts and exchanging matter with the outside world. 
Pross observes that if you meet a friend you haven’t seen for years and look at him with the eyes of physics, you are looking at a wholly new individual.  Almost all the molecular constituents that made up his physical body when last you saw him are gone.  Hundreds of billions of new cells are born in our bodies every day and in each cell the proteins are constantly being remanufactured.  Yet you are looking at the same person. 
A third feature of organisms I will mention is their resistance to equilibrium.  Put a bowl of water in a freezer.  You now have a state of disequilibrium.  The water is warmer than the surrounding environment.  In short order the heat in the water will leak out and the water will freeze.  The temperature of everything in the freezer will equalize.  That is what physics is comfortable with. 
Now put an arctic rodent in the freezer.  As long as the animal remains healthy it will maintain its body temperature well above the level of its surroundings, just bird resist gravity by beating its wings.  To live is to be stubbornly resistant to physical equilibrium. 
I can’t wait to find out what systems chemistry is and how it can reconcile the two worlds.  I am guessing, with one chapter under my belt, that this will not be a reductionist account of life.  As Hans Jonas has pointed out, the fact that living organisms emerged out of none living matter and consist of dead molecules is a two-edged sword.  On the one hand, means that all souls have material origins.  On the other hand, it means that dead matter has spiritual potential.  I like that just fine.